ALSE - Motif Finding Tool

Department of Computer Science, The University of Hong Kong ©
Program version 0.8 (14/06/2004)
Fri Jul 2 14:11:11 2004

Program Parameters

True set file:../alse2/3210/trueSeq3210.txt

  • randSeqT0
  • randSeqT1
  • randSeqT2
  • randSeqT3
  • randSeqT4
  • randSeqT5
  • randSeqT6
  • randSeqT7
  • randSeqT8
  • randSeqT9
  • etc...
False set file (background sequence): ../alse2/3210/falseSeq3210.txt

  • randSeqF0
  • randSeqF1
  • randSeqF2
  • randSeqF3
  • randSeqF4
  • randSeqF5
  • randSeqF6
  • randSeqF7
  • randSeqF8
  • randSeqF9
  • etc...
motif length: 6
no. of seeds used: 100
test reversed sequences: True
no. of seeds used: 100
output HTML filename: ./output.html
execution time: 3 mins(s) 1 secs

Found Motifs:

  Pattern p-value Alpha (α)
Motif #1:G T A T G A 8.61e-050.00579
Motif #2:T C A T A C 8.61e-050.00579
Motif #3:A A G G A G 9.57e-050.0156
Motif #4:C T C C T T 9.57e-050.0156
Motif #5:T T T T C T 0.0002290.00517
Motif #6:A G A A A A 0.0002290.00517
Motif #7:A T A A A A 0.0002550.0156
Motif #8:T T T T A T 0.0002550.0156
Motif #9:A T G C T A 0.0002550.0156
Motif #10:T A G C A T 0.0002550.0156
Motif #11:T A T G T G 0.0003680.00596
Motif #12:C A C A T A 0.0003680.00596
Motif #13:G T A T C A 0.0004540.0156
Motif #14:T G A T A C 0.0004540.0156
Motif #15:T T T T T T 0.0005010.00513
Motif #16:A A A A A A 0.0005010.00513
Motif #17:G C A T A C 0.0005320.0156
Motif #18:G T A T G C 0.0005320.0156
Motif #19:T G T C C A 0.0005740.0049
Motif #20:T G G A C A 0.0005740.0049
Motif #21:G G G T A A 0.0005740.00359
Motif #22:T T A C C C 0.0005740.00359
Motif #23:G T G A T A 0.0005970.0156
Motif #24:T A T C A C 0.0005970.0156
Motif #25:G T A T A C 0.0006070.00491
Motif #26:G T A T A C 0.0006070.00491
Motif #27:C A C A T G 0.0006210.00581
Motif #28:C A T G T G 0.0006210.00581
Motif #29:C G T A T A 0.0009770.00122
Motif #30:T A T A C G 0.0009770.00122
Motif #31:A T G T G G 0.001060.0156
Motif #32:C C A C A T 0.001060.0156
Motif #33:A C G C A T 0.001060.0156
Motif #34:A T G C G T 0.001060.0156
Motif #35:C G C A T A 0.001110.00376
Motif #36:T A T G C G 0.001110.00376
Motif #37:T A G T A T 0.001490.00542
Motif #38:A T A C T A 0.001490.00542
Motif #39:T A C T G A 0.001490.00509
Motif #40:T C A G T A 0.001490.00509
Motif #41:T G T A G G 0.001870.00535
Motif #42:C C T A C A 0.001870.00535
Motif #43:C A T A G C 0.001870.00518
Motif #44:G G A T T A 0.002770.0156
Motif #45:T A A T C C 0.002770.0156
Motif #46:C T A A T C 0.002860.0156
Motif #47:G A T T A G 0.002860.0156
Motif #48:G C A A C C 0.002860.0156
Motif #49:A T T C G C 0.002860.0156
Motif #50:G G T T G C 0.002860.0156

Motif #1

Pattern  G T A T G A
p-value  8.61e-05
Alpha (α)  0.00579

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.175 0.161 0.515 0.159 0.174 0.468
C 0.163 0.172 0.161 0.169 0.17 0.185
G 0.498 0.165 0.162 0.171 0.485 0.173
T 0.164 0.501 0.162 0.501 0.172 0.174

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT1 (R)0.00579[144..139]  ATTGAGGC   G T A T G C   AGCCTAGA 
randSeqT20.0146[214..219]  CGCCGTGT   G T A T G A   TTAATTAG 
randSeqT2 (R)0.0146[461..456]  CTCTGAGA   G T A T G A   CGCCTATA 
randSeqT30.0146[67..72]  TAATGCTA   G T A T G A   CGTAGACT 
randSeqT30.0146[84..89]  AGACTTGA   G T A T G A   CCAGGGAC 
randSeqT40.0146[226..231]  TACAGTTA   G T A T G A   GGAGCCCG 
randSeqT6 (R)0.00579[150..145]  ACTTCTGC   G T A T G C   CACGACGA 
randSeqT7 (R)0.00579[76..71]  TCGTTTAT   G T A T G C   GAAAATGG 
randSeqT8 (R)0.0146[272..267]  TCGTATAG   G T A T G A   CACATCCC 
randSeqT90.0146[27..32]  AGTCTCGT   G T A T G A   TTCACGTG 
randSeqT100.0146[419..424]  CTGCCTCG   G T A T G A   AATGTAGG 
randSeqT110.00579[52..57]  AATCACGG   G T A T G C   GTCCTTTA 
randSeqT110.00579[354..359]  TTAGGCCA   G T A T G C   CCGTGCTT 
randSeqT120.00579[290..295]  CAATGGTA   G T A T G C   TTACGTGA 
randSeqT120.00579[451..456]  ATCACCTA   G T A T G C   GACGCGCA 
randSeqT130.00579[421..426]  GACAGTTT   G T A T G C   GTAAGCTG 
randSeqT140.00579[22..27]  GACATCAT   G T A T G C   ATGTCGTA 
randSeqT170.0146[11..16]  TGTCGTGG   G T A T G A   GGTACGCT 
randSeqT170.0146[291..296]  CATTATGC   G T A T G A   AAATTATT 

[back]

Motif #2

Pattern  T C A T A C
p-value  8.61e-05
Alpha (α)  0.00579

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.174 0.172 0.501 0.162 0.501 0.164
C 0.173 0.485 0.171 0.162 0.165 0.498
G 0.185 0.17 0.169 0.161 0.172 0.163
T 0.468 0.174 0.159 0.515 0.161 0.175

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT10.00579[139..144]  AATAGTTT   G C A T A C   GCCTCAAT 
randSeqT20.0146[456..461]  TGGAAACG   T C A T A C   TCTCAGAG 
randSeqT2 (R)0.0146[219..214]  CTAATTAA   T C A T A C   CAGCATGG 
randSeqT30.0146[118..123]  CATCCCTC   T C A T A C   GGATCGCG 
randSeqT3 (R)0.0146[89..84]  GTCCCTGG   T C A T A C   GTCGGAGG 
randSeqT4 (R)0.0146[231..226]  CGGGCTCC   T C A T A C   TGACTCTA 
randSeqT60.00579[145..150]  CTTCGATT   G C A T A C   GCAGAAGT 
randSeqT70.00579[71..76]  TTCAGACG   G C A T A C   ATAAACGA 
randSeqT80.0146[267..272]  CAGGGCCA   T C A T A C   CTATACGA 
randSeqT9 (R)0.0146[32..27]  CACGTGAA   T C A T A C   AGTATAGC 
randSeqT10 (R)0.0146[424..419]  CCTACATT   T C A T A C   GGTAGGGA 
randSeqT11 (R)0.00579[359..354]  AAGCACGG   G C A T A C   AAAAGCAG 
randSeqT11 (R)0.00579[57..52]  TAAAGGAC   G C A T A C   AAGGGGCT 
randSeqT12 (R)0.00579[456..451]  TGCGCGTC   G C A T A C   CATAGCGT 
randSeqT12 (R)0.00579[295..290]  TCACGTAA   G C A T A C   CTTCCCCA 
randSeqT13 (R)0.00579[426..421]  CAGCTTAC   G C A T A C   TGCTATGT 
randSeqT14 (R)0.00579[27..22]  TACGACAT   G C A T A C   CAGAACCG 
randSeqT17 (R)0.0146[296..291]  AATAATTT   T C A T A C   TGAAGTGT 
randSeqT17 (R)0.0146[16..11]  AGCGTACC   T C A T A C   GCAAGTCG 

[back]

Motif #3

Pattern  A A G G A G
p-value  9.57e-05
Alpha (α)  0.0156

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.5 0.5 0.167 0.167 0.5 0.167
C 0.167 0.167 0.167 0.167 0.167 0.167
G 0.167 0.167 0.5 0.5 0.167 0.5
T 0.167 0.167 0.167 0.167 0.167 0.167

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT00.0156[227..232]  GCCGGACG   A A G G A G   TCGCTCGG 
randSeqT3 (R)0.0156[44..39]  CATATAGT   A A G G A G   GTCCAAGA 
randSeqT50.0156[332..337]  TGATGATG   A A G G A G   GGTGATAC 
randSeqT5 (R)0.0156[317..312]  CATCTGTC   A A G G A G   AGCGAATT 
randSeqT6 (R)0.0156[396..391]  TTGCGTCT   A A G G A G   AGCATGTA 
randSeqT120.0156[227..232]  GGTTGGAT   A A G G A G   CAGGCCCG 
randSeqT12 (R)0.0156[435..430]  TCTAGATT   A A G G A G   CCCCACGG 
randSeqT13 (R)0.0156[163..158]  TTTTTTCT   A A G G A G   ATCTATAG 
randSeqT15 (R)0.0156[28..23]  GCGGAAGT   A A G G A G   ACGTTGCA 
randSeqT16 (R)0.0156[51..46]  CTGATACT   A A G G A G   ACTACATG 
randSeqT170.0156[259..264]  CTAAATCA   A A G G A G   AGCGATAG 

[back]

Motif #4

Pattern  C T C C T T
p-value  9.57e-05
Alpha (α)  0.0156

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.167 0.167 0.167 0.167 0.167 0.167
C 0.5 0.167 0.5 0.5 0.167 0.167
G 0.167 0.167 0.167 0.167 0.167 0.167
T 0.167 0.5 0.167 0.167 0.5 0.5

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT0 (R)0.0156[232..227]  CCGAGCGA   C T C C T T   ACAGTAGT 
randSeqT30.0156[39..44]  TAATTTTG   C T C C T T   ACTATATG 
randSeqT50.0156[312..317]  CAACGAGA   C T C C T T   GACAGATG 
randSeqT5 (R)0.0156[337..332]  GTATCACC   C T C C T T   GCATTAAC 
randSeqT60.0156[391..396]  TGACCAGC   C T C C T T   AGACGCAA 
randSeqT120.0156[430..435]  AAGTAGCA   C T C C T T   AATCTAGA 
randSeqT12 (R)0.0156[232..227]  CGGGCCTG   C T C C T T   ACTTCTTT 
randSeqT130.0156[158..163]  TCGTAAGC   C T C C T T   AGAAAAAA 
randSeqT150.0156[23..28]  CGTGTGTC   C T C C T T   ACTTCCGC 
randSeqT160.0156[46..51]  GGGGACAT   C T C C T T   AGTATCAG 
randSeqT17 (R)0.0156[264..259]  CTATCGCT   C T C C T T   ACGCGCTA 

[back]

Motif #5

Pattern  T T T T C T
p-value  0.000229
Alpha (α)  0.00517

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.166 0.177 0.174 0.17 0.172 0.161
C 0.166 0.163 0.16 0.172 0.476 0.174
G 0.172 0.17 0.173 0.173 0.173 0.172
T 0.496 0.49 0.493 0.486 0.18 0.493

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT10.00517[437..442]  TCCAGAAA   T T T T T T   ATATCAAT 
randSeqT20.0137[357..362]  CCGTTCGG   T T T T C T   CTTAGTTG 
randSeqT2 (R)0.00517[145..140]  AGCCGACA   T T T T T T   CTCTTAGT 
randSeqT3 (R)0.00517[348..343]  GGTTTACG   T T T T T T   CCAAACTT 
randSeqT4 (R)0.0137[287..282]  AAATGGTC   T T T T C T   ACAGTTAG 
randSeqT50.0137[417..422]  TATGGGCT   T T T T C T   AATGAGCT 
randSeqT50.00517[369..374]  GCCAAATC   T T T T T T   GCCGCGCT 
randSeqT6 (R)0.0137[339..334]  AAGCGCAG   T T T T C T   AGCTATAG 
randSeqT7 (R)0.0137[434..429]  TCTATCCA   T T T T C T   CATACATA 
randSeqT8 (R)0.00517[79..74]  GTCCACGA   T T T T T T   TTGATTAG 
randSeqT8 (R)0.00517[78..73]  TCCACGAT   T T T T T T   TGATTAGA 
randSeqT11 (R)0.0137[277..272]  TTACTTCC   T T T T C T   ACTCCCTA 
randSeqT13 (R)0.0137[169..164]  TCTCGCTT   T T T T C T   TACTTTAT 
randSeqT13 (R)0.00517[171..166]  GATCTCGC   T T T T T T   ACTACTTT 
randSeqT140.0137[59..64]  AGCTGATC   T T T T C T   CCACGCCT 
randSeqT140.0137[420..425]  GTGGCGCC   T T T T C T   CAGCGGTC 
randSeqT16 (R)0.0137[306..301]  TGAACCCT   T T T T C T   GTTGCCCA 
randSeqT19 (R)0.0137[314..309]  ATAAATTT   T T T T C T   GCACTTCA 
randSeqT19 (R)0.00517[317..312]  CTAATAAA   T T T T T T   GCTGCACT 

[back]

Motif #6

Pattern  A G A A A A
p-value  0.000229
Alpha (α)  0.00517

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.493 0.18 0.486 0.493 0.49 0.496
C 0.172 0.173 0.173 0.173 0.17 0.172
G 0.174 0.476 0.172 0.16 0.163 0.166
T 0.161 0.172 0.17 0.174 0.177 0.166

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT1 (R)0.00517[442..437]  ATTGATAT   A A A A A A   GGGGTGCT 
randSeqT2 (R)0.0137[362..357]  CAACTAAG   A G A A A A   AATGTCGG 
randSeqT20.00517[139..144]  GTACCGGG   A A A A A A   ATGTCGGC 
randSeqT30.00517[343..348]  GTATCGGC   A A A A A A   CGTAAACC 
randSeqT40.0137[282..287]  CTGACTCT   A G A A A A   GACCATTT 
randSeqT5 (R)0.0137[422..417]  AGCTCATT   A G A A A A   GATGACGC 
randSeqT5 (R)0.00517[374..369]  AGCGCGGC   A A A A A A   CGCGAAAT 
randSeqT60.0137[334..339]  CGTCGCTC   A G A A A A   CTGCGCTT 
randSeqT70.0137[429..434]  TTGCGCTA   A G A A A A   TGGATAGA 
randSeqT80.00517[73..78]  GCAACATT   A A A A A A   ATCGTGGA 
randSeqT80.00517[74..79]  CAACATTA   A A A A A A   TCGTGGAC 
randSeqT110.0137[272..277]  TCGGCTCC   A G A A A A   GGAAGTAA 
randSeqT130.0137[164..169]  GCCTCCTT   A G A A A A   AAGCGAGA 
randSeqT130.00517[166..171]  CTCCTTAG   A A A A A A   GCGAGATC 
randSeqT14 (R)0.0137[425..420]  GACCGCTG   A G A A A A   AATCGCAA 
randSeqT14 (R)0.0137[64..59]  AGGCGTGG   A G A A A A   ACTATGCG 
randSeqT160.0137[301..306]  CGGCCGGA   A G A A A A   AGGGTTCA 
randSeqT190.0137[309..314]  CTACGACG   A G A A A A   AAATTTAT 
randSeqT190.00517[247..252]  GCCCCTAT   A A A A A A   GCTATGGT 

[back]

Motif #7

Pattern  A T A A A A
p-value  0.000255
Alpha (α)  0.0156

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.5 0.167 0.5 0.5 0.5 0.5
C 0.167 0.167 0.167 0.167 0.167 0.167
G 0.167 0.167 0.167 0.167 0.167 0.167
T 0.167 0.5 0.167 0.167 0.167 0.167

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT1 (R)0.0156[444..439]  TAATTGAT   A T A A A A   ATGGGGTG 
randSeqT2 (R)0.0156[448..443]  ACGTTTCC   A T A A A A   GGGCAGCA 
randSeqT4 (R)0.0156[266..261]  GGAGGCAC   A T A A A A   TAAACTGA 
randSeqT60.0156[470..475]  GCGTGTAC   A T A A A A   CTTGCGAC 
randSeqT7 (R)0.0156[38..33]  CCGCTAGA   A T A A A A   AGACGCGG 
randSeqT90.0156[95..100]  ATTCTAAG   A T A A A A   TCTGGGAC 
randSeqT12 (R)0.0156[258..253]  TACAAGGG   A T A A A A   CAGCCTTT 
randSeqT140.0156[44..49]  ACGGGAGA   A T A A A A   AAGCTGAT 
randSeqT160.0156[143..148]  AGATTGGC   A T A A A A   GCTGTAAC 
randSeqT190.0156[126..131]  CAGTTCGT   A T A A A A   ATCAGCGT 
randSeqT190.0156[245..250]  TCGCCCCT   A T A A A A   AAGCTATG 

[back]

Motif #8

Pattern  T T T T A T
p-value  0.000255
Alpha (α)  0.0156

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.167 0.167 0.167 0.167 0.5 0.167
C 0.167 0.167 0.167 0.167 0.167 0.167
G 0.167 0.167 0.167 0.167 0.167 0.167
T 0.5 0.5 0.5 0.5 0.167 0.5

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT10.0156[439..444]  CAGAAATT   T T T T A T   ATCAATTA 
randSeqT20.0156[443..448]  ACGGGGCA   T T T T A T   GGAAACGT 
randSeqT40.0156[261..266]  ATGCTGTC   T T T T A T   GTGCCTCC 
randSeqT6 (R)0.0156[475..470]  GTCGCAAG   T T T T A T   CCTTGCAC 
randSeqT70.0156[33..38]  TGGCTATG   T T T T A T   TCTAGCGG 
randSeqT9 (R)0.0156[100..95]  GTCCCAGA   T T T T A T   CGCCCGGT 
randSeqT120.0156[253..258]  GGACAGCC   T T T T A T   CCCTTGTA 
randSeqT14 (R)0.0156[49..44]  ATCAGCTT   T T T T A T   GTCGTAGT 
randSeqT16 (R)0.0156[148..143]  GTTACAGC   T T T T A T   ACGCCTCA 
randSeqT190.0156[165..170]  CGTTATTG   T T T T A T   GTGGTGGC 
randSeqT19 (R)0.0156[250..245]  CATAGCTT   T T T T A T   ATGGTTTA 

[back]

Motif #9

Pattern  A T G C T A
p-value  0.000255
Alpha (α)  0.0156

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.5 0.167 0.167 0.167 0.167 0.5
C 0.167 0.167 0.167 0.5 0.167 0.167
G 0.167 0.167 0.5 0.167 0.167 0.167
T 0.167 0.5 0.167 0.167 0.5 0.167

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT10.0156[210..215]  GGTGAAAC   A T G C T A   TGTGTACG 
randSeqT30.0156[61..66]  GCAACCTA   A T G C T A   GTATGACG 
randSeqT5 (R)0.0156[36..31]  AGAACATT   A T G C T A   AGTGCAGT 
randSeqT6 (R)0.0156[114..109]  ATCAGTAC   A T G C T A   TCCTTAGA 
randSeqT90.0156[348..353]  GTCTTTCT   A T G C T A   AATCTGGT 
randSeqT9 (R)0.0156[483..478]  GTGGTTTA   A T G C T A   TCGTGTAT 
randSeqT130.0156[79..84]  ATTAGCTC   A T G C T A   TGTGTGTC 
randSeqT15 (R)0.0156[450..445]  GACAATCG   A T G C T A   CACAAGGG 
randSeqT170.0156[108..113]  CTAAGTTC   A T G C T A   ACACGAGA 
randSeqT19 (R)0.0156[492..487]  ATAGTTT   A T G C T A   ACTCGAAT 
randSeqT19 (R)0.0156[267..262]  GCACACAT   A T G C T A   GCCCCTAT 

[back]

Motif #10

Pattern  T A G C A T
p-value  0.000255
Alpha (α)  0.0156

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.167 0.5 0.167 0.167 0.5 0.167
C 0.167 0.167 0.167 0.5 0.167 0.167
G 0.167 0.167 0.5 0.167 0.167 0.167
T 0.5 0.167 0.167 0.167 0.167 0.5

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT1 (R)0.0156[215..210]  CGTACACA   T A G C A T   CATGGCTC 
randSeqT3 (R)0.0156[66..61]  CGTCATAC   T A G C A T   AGGCGCCG 
randSeqT50.0156[31..36]  TCACGTAA   T A G C A T   AATGTTCT 
randSeqT60.0156[109..114]  AGTACGTC   T A G C A T   GTACTGAT 
randSeqT90.0156[478..483]  TCACAGTA   T A G C A T   TAAACCAC 
randSeqT9 (R)0.0156[353..348]  ACCAGATT   T A G C A T   TGTGCATT 
randSeqT13 (R)0.0156[84..79]  GACACACA   T A G C A T   TATGCGTA 
randSeqT150.0156[445..450]  GGTCCGCG   T A G C A T   CGATTGTC 
randSeqT17 (R)0.0156[113..108]  TCTCGTGT   T A G C A T   ATCACGGT 
randSeqT190.0156[262..267]  CTATGGTT   T A G C A T   ATGTGTGC 
randSeqT190.0156[487..492]  GGACATAA   T A G C A T   AAACTAT 

[back]

Motif #11

Pattern  T A T G T G
p-value  0.000368
Alpha (α)  0.00596

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.159 0.518 0.154 0.18 0.16 0.168
C 0.169 0.153 0.169 0.16 0.176 0.164
G 0.159 0.164 0.163 0.497 0.169 0.498
T 0.512 0.165 0.515 0.163 0.494 0.169

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT00.00605[368..373]  ACGAGTAT   T A T A T G   CCCAGGTG 
randSeqT10.0167[31..36]  CATCCCAA   T A T G T G   TTCGAGCT 
randSeqT10.0167[214..219]  AAACATGC   T A T G T G   TACGCGGA 
randSeqT20.0167[117..122]  TTGCCAAA   T A T G T G   GGCTGCTT 
randSeqT20.00596[161..166]  TTGAGGTG   T A T G C G   GAGCACAT 
randSeqT30.00605[47..52]  CTCCTTAC   T A T A T G   GCAACCTA 
randSeqT40.0167[264..269]  CTGTCTTT   T A T G T G   CCTCCTGA 
randSeqT40.00605[57..62]  AGGTGTGT   T A T A T G   CCAGCAGG 
randSeqT70.0167[55..60]  GCCCGAAG   T A T G T G   GTTTCAGA 
randSeqT70.0167[197..202]  ATACAGGC   T A T G T G   GCTGCAGA 
randSeqT80.0167[341..346]  CCTTTCTT   T A T G T G   TGGCAATC 
randSeqT90.00596[255..260]  TACGTCCA   T A T G C G   TTGGTGGC 
randSeqT100.0167[299..304]  TACGGGCC   T A T G T G   GCAGGCTT 
randSeqT110.0167[367..372]  CCCGTGCT   T A T G T G   CTGGGTTG 
randSeqT110.00596[53..58]  ATCACGGG   T A T G C G   TCCTTTAG 
randSeqT120.0167[1..6]     T A T G T G   GCTGGTTA 
randSeqT120.00596[305..310]  TACGTGAC   T A T G C G   TCCCCATG 
randSeqT130.0167[83..88]  GCTCATGC   T A T G T G   TGTCGGTA 
randSeqT130.00596[422..427]  ACAGTTTG   T A T G C G   TAAGCTGC 
randSeqT140.0167[276..281]  CCTCCTCT   T A T G T G   GTAAGTGT 
randSeqT140.00596[444..449]  GGCTCTAC   T A T G C G   TATCGGAG 
randSeqT150.0167[250..255]  CCTGACTA   T A T G T G   GAAGGGCG 
randSeqT150.00605[248..253]  TTCCTGAC   T A T A T G   TGGAAGGG 
randSeqT16 (R)0.00605[228..223]  TGGGGCAG   T A T A T G   CTTCAAAT 
randSeqT170.00596[286..291]  CTTACCAT   T A T G C G   TATGAAAA 
randSeqT170.00596[459..464]  ACGCGGGG   T A T G C G   TTTATTGT 
randSeqT180.00605[64..69]  AGCCCAGA   T A T A T G   GAGATTAT 
randSeqT190.0167[168..173]  TATTGTTT   T A T G T G   GTGGCCCC 
randSeqT190.0167[267..272]  GTTTAGCA   T A T G T G   TGCACCCG 

[back]

Motif #12

Pattern  C A C A T A
p-value  0.000368
Alpha (α)  0.00596

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.169 0.494 0.163 0.515 0.165 0.512
C 0.498 0.169 0.497 0.163 0.164 0.159
G 0.164 0.176 0.16 0.169 0.153 0.169
T 0.168 0.16 0.18 0.154 0.518 0.159

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT0 (R)0.00605[373..368]  CACCTGGG   C A T A T A   TCCCCTAG 
randSeqT1 (R)0.0167[219..214]  TCCGCGTA   C A C A T A   TTCGCATG 
randSeqT1 (R)0.0167[36..31]  AGCTCGAA   C A C A T A   TTAACTAC 
randSeqT2 (R)0.0167[122..117]  AAGCAGCC   C A C A T A   TTAGGGAA 
randSeqT2 (R)0.00596[166..161]  ATGTGCTC   C G C A T A   GCAGCTAT 
randSeqT3 (R)0.00605[52..47]  TAGGTTGC   C A T A T A   GGCCAAGA 
randSeqT4 (R)0.0167[269..264]  TCAGGAGG   C A C A T A   CCGTAAAC 
randSeqT4 (R)0.00605[62..57]  CCTGCTGG   C A T A T A   TACGTTTG 
randSeqT7 (R)0.0167[202..197]  TCTGCAGC   C A C A T A   GTCAAGAA 
randSeqT7 (R)0.0167[60..55]  TCTGAAAC   C A C A T A   CACCTCAG 
randSeqT8 (R)0.0167[346..341]  GATTGCCA   C A C A T A   AGGAACTC 
randSeqT9 (R)0.00596[260..255]  GCCACCAA   C G C A T A   ATACGTCC 
randSeqT10 (R)0.0167[304..299]  AAGCCTGC   C A C A T A   AAGAACAT 
randSeqT11 (R)0.0167[372..367]  CAACCCAG   C A C A T A   GTCTGGCA 
randSeqT11 (R)0.00596[256..251]  AGCCCCGC   C G C A T A   TTATGCGG 
randSeqT12 (R)0.0167[6..1]  TAACCAGC   C A C A T A    
randSeqT12 (R)0.00596[457..452]  GTGCGCGT   C G C A T A   ACATAGCG 
randSeqT13 (R)0.0167[88..83]  TACCGACA   C A C A T A   TTTGTATG 
randSeqT13 (R)0.00596[427..422]  GCAGCTTA   C G C A T A   ATGCTATG 
randSeqT14 (R)0.0167[281..276]  ACACTTAC   C A C A T A   AGCGAAGG 
randSeqT14 (R)0.00596[449..444]  CTCCGATA   C G C A T A   TCTTTTCT 
randSeqT15 (R)0.0167[255..250]  CGCCCTTC   C A C A T A   ATGTGGAA 
randSeqT15 (R)0.00605[253..248]  CCCTTCCA   C A T A T A   GTGGAAGG 
randSeqT160.00605[223..228]  TATCGAGG   C A T A T A   CTGCCCCA 
randSeqT17 (R)0.00596[464..459]  ACAATAAA   C G C A T A   GGGTGGAG 
randSeqT17 (R)0.00596[291..286]  TTTTCATA   C G C A T A   TGTTCTGC 
randSeqT18 (R)0.00605[69..64]  ATAATCTC   C A T A T A   ATAGCTTA 
randSeqT19 (R)0.0167[272..267]  CGGGTGCA   C A C A T A   CTTTCGCC 
randSeqT19 (R)0.0167[173..168]  GGGGCCAC   C A C A T A   CTAGGGTT 

[back]

Motif #13

Pattern  G T A T C A
p-value  0.000454
Alpha (α)  0.0156

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.167 0.167 0.5 0.167 0.167 0.5
C 0.167 0.167 0.167 0.167 0.5 0.167
G 0.5 0.167 0.167 0.167 0.167 0.167
T 0.167 0.5 0.167 0.5 0.167 0.167

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT0 (R)0.0156[30..25]  GTAAGGCG   G T A T C A   CGCAACGG 
randSeqT10.0156[352..357]  CCCATCTA   G T A T C A   GGAAAGCC 
randSeqT50.0156[93..98]  ATGACGCT   G T A T C A   ACATACAT 
randSeqT5 (R)0.0156[345..340]  ATCGACGG   G T A T C A   GCTTCCCA 
randSeqT8 (R)0.0156[495..490]  TATG   G T A T C A   CCCAATGA 
randSeqT9 (R)0.0156[117..112]  ATCCAGAG   G T A T C A   AAAGAGTG 
randSeqT100.0156[270..275]  CGGTGATC   G T A T C A   ACCATCTC 
randSeqT120.0156[190..195]  GGGCGCTA   G T A T C A   CCTGACCT 
randSeqT160.0156[53..58]  TCTCCTTA   G T A T C A   GGCATCTC 
randSeqT16 (R)0.0156[112..107]  CTAACTGT   G T A T C A   AGGCTAAC 
randSeqT170.0156[391..396]  TACGTACT   G T A T C A   CGGTAGGG 
randSeqT18 (R)0.0156[133..128]  GCCCAACT   G T A T C A   CGCCAAGT 
randSeqT19 (R)0.0156[15..10]  GCATTCGA   G T A T C A   ATAAACTA 

[back]

Motif #14

Pattern  T G A T A C
p-value  0.000454
Alpha (α)  0.0156

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.167 0.167 0.5 0.167 0.5 0.167
C 0.167 0.167 0.167 0.167 0.167 0.5
G 0.167 0.5 0.167 0.167 0.167 0.167
T 0.5 0.167 0.167 0.5 0.167 0.167

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT00.0156[25..30]  CCTGGAGG   T G A T A C   CGCCTTAC 
randSeqT1 (R)0.0156[357..352]  GGCTTTCC   T G A T A C   CAATACGT 
randSeqT50.0156[340..345]  AAGGAGGG   T G A T A C   CCGTCGAT 
randSeqT5 (R)0.0156[98..93]  ATGTATGT   T G A T A C   TTATGGGC 
randSeqT80.0156[490..495]  GATAAGCG   T G A T A C   CATA 
randSeqT90.0156[112..117]  GGGACTCC   T G A T A C   CTCTGGAT 
randSeqT10 (R)0.0156[275..270]  GAGATGGT   T G A T A C   ACTAAGGT 
randSeqT12 (R)0.0156[195..190]  AGGTCAGG   T G A T A C   TCCCCATG 
randSeqT160.0156[107..112]  TCGCTAAC   T G A T A C   ACAGTTAG 
randSeqT16 (R)0.0156[58..53]  GAGATGCC   T G A T A C   ACCAATAA 
randSeqT17 (R)0.0156[396..391]  CCCTACCG   T G A T A C   GCTAACAC 
randSeqT180.0156[128..133]  CGGTGGTG   T G A T A C   AGTTGGGC 
randSeqT190.0156[10..15]  CAATTACC   T G A T A C   TCGAATGC 

[back]

Motif #15

Pattern  T T T T T T
p-value  0.000501
Alpha (α)  0.00513

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.169 0.173 0.172 0.171 0.172 0.164
C 0.165 0.16 0.163 0.166 0.168 0.169
G 0.168 0.17 0.172 0.169 0.17 0.17
T 0.498 0.496 0.493 0.494 0.49 0.497

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT10.0147[437..442]  TCCAGAAA   T T T T T T   ATATCAAT 
randSeqT10.00513[439..444]  CAGAAATT   T T T T A T   ATCAATTA 
randSeqT2 (R)0.0147[145..140]  AGCCGACA   T T T T T T   CTCTTAGT 
randSeqT2 (R)0.0147[144..139]  GCCGACAT   T T T T T T   TCTTAGTT 
randSeqT3 (R)0.0147[348..343]  GGTTTACG   T T T T T T   CCAAACTT 
randSeqT40.00513[261..266]  ATGCTGTC   T T T T A T   GTGCCTCC 
randSeqT50.0147[369..374]  GCCAAATC   T T T T T T   GCCGCGCT 
randSeqT6 (R)0.00513[475..470]  GTCGCAAG   T T T T A T   CCTTGCAC 
randSeqT70.00513[33..38]  TGGCTATG   T T T T A T   TCTAGCGG 
randSeqT8 (R)0.0147[79..74]  GTCCACGA   T T T T T T   TTGATTAG 
randSeqT8 (R)0.0147[78..73]  TCCACGAT   T T T T T T   TGATTAGA 
randSeqT9 (R)0.00513[100..95]  GTCCCAGA   T T T T A T   CGCCCGGT 
randSeqT120.00513[253..258]  GGACAGCC   T T T T A T   CCCTTGTA 
randSeqT13 (R)0.0147[171..166]  GATCTCGC   T T T T T T   ACTACTTT 
randSeqT14 (R)0.0147[51..46]  AGATCAGC   T T T T T T   GAGTCGTA 
randSeqT14 (R)0.00513[49..44]  ATCAGCTT   T T T T A T   GTCGTAGT 
randSeqT16 (R)0.00513[148..143]  GTTACAGC   T T T T A T   ACGCCTCA 
randSeqT19 (R)0.0147[317..312]  CTAATAAA   T T T T T T   GCTGCACT 
randSeqT19 (R)0.0147[316..311]  TAATAAAT   T T T T T T   CTGCACTT 

[back]

Motif #16

Pattern  A A A A A A
p-value  0.000501
Alpha (α)  0.00513

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.497 0.49 0.494 0.493 0.496 0.498
C 0.17 0.17 0.169 0.172 0.17 0.168
G 0.169 0.168 0.166 0.163 0.16 0.165
T 0.164 0.172 0.171 0.172 0.173 0.169

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT1 (R)0.0147[442..437]  ATTGATAT   A A A A A A   GGGGTGCT 
randSeqT1 (R)0.00513[444..439]  TAATTGAT   A T A A A A   ATGGGGTG 
randSeqT20.0147[139..144]  GTACCGGG   A A A A A A   ATGTCGGC 
randSeqT20.0147[140..145]  TACCGGGA   A A A A A A   TGTCGGCT 
randSeqT30.0147[343..348]  GTATCGGC   A A A A A A   CGTAAACC 
randSeqT4 (R)0.00513[266..261]  GGAGGCAC   A T A A A A   TAAACTGA 
randSeqT5 (R)0.0147[374..369]  AGCGCGGC   A A A A A A   CGCGAAAT 
randSeqT60.00513[470..475]  GCGTGTAC   A T A A A A   CTTGCGAC 
randSeqT7 (R)0.00513[38..33]  CCGCTAGA   A T A A A A   AGACGCGG 
randSeqT80.0147[73..78]  GCAACATT   A A A A A A   ATCGTGGA 
randSeqT80.0147[74..79]  CAACATTA   A A A A A A   TCGTGGAC 
randSeqT90.00513[95..100]  ATTCTAAG   A T A A A A   TCTGGGAC 
randSeqT12 (R)0.00513[258..253]  TACAAGGG   A T A A A A   CAGCCTTT 
randSeqT130.0147[166..171]  CTCCTTAG   A A A A A A   GCGAGATC 
randSeqT140.0147[46..51]  GGGAGAAT   A A A A A A   GCTGATCT 
randSeqT140.00513[44..49]  ACGGGAGA   A T A A A A   AAGCTGAT 
randSeqT160.00513[143..148]  AGATTGGC   A T A A A A   GCTGTAAC 
randSeqT190.0147[247..252]  GCCCCTAT   A A A A A A   GCTATGGT 
randSeqT190.0147[311..316]  ACGACGAG   A A A A A A   ATTTATTA 

[back]

Motif #17

Pattern  G C A T A C
p-value  0.000532
Alpha (α)  0.0156

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.167 0.167 0.5 0.167 0.5 0.167
C 0.167 0.5 0.167 0.167 0.167 0.5
G 0.5 0.167 0.167 0.167 0.167 0.167
T 0.167 0.167 0.167 0.5 0.167 0.167

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT10.0156[139..144]  AATAGTTT   G C A T A C   GCCTCAAT 
randSeqT2 (R)0.0156[165..160]  TGTGCTCC   G C A T A C   CAGCTATT 
randSeqT60.0156[145..150]  CTTCGATT   G C A T A C   GCAGAAGT 
randSeqT70.0156[71..76]  TTCAGACG   G C A T A C   ATAAACGA 
randSeqT11 (R)0.0156[359..354]  AAGCACGG   G C A T A C   AAAAGCAG 
randSeqT11 (R)0.0156[57..52]  TAAAGGAC   G C A T A C   AAGGGGCT 
randSeqT12 (R)0.0156[456..451]  TGCGCGTC   G C A T A C   CATAGCGT 
randSeqT12 (R)0.0156[295..290]  TCACGTAA   G C A T A C   CTTCCCCA 
randSeqT13 (R)0.0156[426..421]  CAGCTTAC   G C A T A C   TGCTATGT 
randSeqT14 (R)0.0156[27..22]  TACGACAT   G C A T A C   CAGAACCG 
randSeqT17 (R)0.0156[488..483]  GACTTGCG   G C A T A C   GTACGCTA 
randSeqT17 (R)0.0156[463..458]  CAATAAAC   G C A T A C   GGTGGAGA 

[back]

Motif #18

Pattern  G T A T G C
p-value  0.000532
Alpha (α)  0.0156

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.167 0.167 0.5 0.167 0.167 0.167
C 0.167 0.167 0.167 0.167 0.167 0.5
G 0.5 0.167 0.167 0.167 0.5 0.167
T 0.167 0.5 0.167 0.5 0.167 0.167

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT1 (R)0.0156[144..139]  ATTGAGGC   G T A T G C   AGCCTAGA 
randSeqT20.0156[160..165]  CTTGAGGT   G T A T G C   GGAGCACA 
randSeqT6 (R)0.0156[150..145]  ACTTCTGC   G T A T G C   CACGACGA 
randSeqT7 (R)0.0156[76..71]  TCGTTTAT   G T A T G C   GAAAATGG 
randSeqT110.0156[52..57]  AATCACGG   G T A T G C   GTCCTTTA 
randSeqT110.0156[354..359]  TTAGGCCA   G T A T G C   CCGTGCTT 
randSeqT120.0156[290..295]  CAATGGTA   G T A T G C   TTACGTGA 
randSeqT120.0156[451..456]  ATCACCTA   G T A T G C   GACGCGCA 
randSeqT130.0156[421..426]  GACAGTTT   G T A T G C   GTAAGCTG 
randSeqT140.0156[22..27]  GACATCAT   G T A T G C   ATGTCGTA 
randSeqT170.0156[458..463]  CACGCGGG   G T A T G C   GTTTATTG 
randSeqT170.0156[483..488]  AACCCTCA   G T A T G C   CGCAAGTC 

[back]

Motif #19

Pattern  T G T C C A
p-value  0.000574
Alpha (α)  0.0049

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.17 0.181 0.168 0.177 0.164 0.48
C 0.171 0.161 0.179 0.482 0.496 0.176
G 0.171 0.487 0.177 0.177 0.162 0.172
T 0.489 0.17 0.476 0.165 0.178 0.172

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT00.013[404..409]  GACACGTA   T G T C C A   GGGCTCAC 
randSeqT0 (R)0.013[399..394]  GACATACG   T G T C C A   GTGAAATG 
randSeqT20.013[317..322]  TATTTGCC   T G T C C A   CAGGGTGG 
randSeqT30.013[8..13]  TGCCACT   T G T C C A   ACAGACAT 
randSeqT30.0049[232..237]  CCGCCCTG   T G C C C A   TTCGTGGG 
randSeqT50.0049[227..232]  GCTGTACG   T G C C C A   CTATTTAT 
randSeqT70.013[162..167]  AGAGGATA   T G T C C A   GAGTCGTA 
randSeqT70.0049[107..112]  CCTCATAG   T G C C C A   GGCAGCCA 
randSeqT8 (R)0.013[88..83]  AGTCCTGT   T G T C C A   GTCGAAGG 
randSeqT8 (R)0.0049[385..380]  AACGTCTT   T G C C C A   AGGCTAAG 
randSeqT13 (R)0.013[416..411]  ATACAAAC   T G T C C A   GTCGGTAT 
randSeqT140.013[148..153]  GGCCTGCC   T G T C C A   CCCAAAGT 
randSeqT160.0049[202..207]  AGTACTGT   T G C C C A   TTCTAGAT 
randSeqT170.013[142..147]  ACCTCATT   T G T C C A   AAGTCTTA 
randSeqT18 (R)0.0049[163..158]  TCAGATTC   T G C C C A   CGAGCCCG 
randSeqT18 (R)0.0049[142..137]  CTCCCTCA   T G C C C A   TAGGGTCA 
randSeqT19 (R)0.013[483..478]  TGCTATTA   T G T C C A   CAACGTAC 
randSeqT19 (R)0.0049[71..66]  TACGCGCA   T G C C C A   TCCAGGTC 

[back]

Motif #20

Pattern  T G G A C A
p-value  0.000574
Alpha (α)  0.0049

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.172 0.178 0.165 0.476 0.17 0.489
C 0.172 0.162 0.177 0.177 0.487 0.171
G 0.176 0.496 0.482 0.179 0.161 0.171
T 0.48 0.164 0.177 0.168 0.181 0.17

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT00.013[394..399]  TCCGTATC   T G G A C A   CGTATGTC 
randSeqT0 (R)0.013[409..404]  GTGAGCCC   T G G A C A   TCTGGCTA 
randSeqT2 (R)0.013[322..317]  CCACCCTG   T G G A C A   GCGGGTTC 
randSeqT3 (R)0.013[13..8]  ATGTCTGT   T G G A C A   TACAAAC 
randSeqT3 (R)0.0049[237..232]  CCCACGAA   T G G G C A   TGTAATTC 
randSeqT5 (R)0.0049[232..227]  ATAAATAG   T G G G C A   CGTACCGG 
randSeqT7 (R)0.013[167..162]  TACGACTC   T G G A C A   TCCGTAGC 
randSeqT7 (R)0.0049[112..107]  TGGCTGCC   T G G G C A   ATCTTTTA 
randSeqT80.013[83..88]  AAAAATCG   T G G A C A   ACAGGACT 
randSeqT80.0049[380..385]  CTGTCGGG   T G G G C A   AAGACGTT 
randSeqT130.013[411..416]  TAGACATC   T G G A C A   GTTTGTAT 
randSeqT14 (R)0.013[153..148]  ACTTTGGG   T G G A C A   ACTAGGTG 
randSeqT16 (R)0.0049[207..202]  ATCTAGAA   T G G G C A   GAAGAAAA 
randSeqT17 (R)0.013[147..142]  TAAGACTT   T G G A C A   CGACGAGT 
randSeqT180.0049[137..142]  GATACAGT   T G G G C A   TGAGGGAG 
randSeqT180.0049[158..163]  GTTTTTGT   T G G G C A   GAATCTGA 
randSeqT190.013[478..483]  AGTGGTCT   T G G A C A   TAATAGCA 
randSeqT190.0049[66..71]  TACTGGAC   T G G G C A   TGCGCGTA 

[back]

Motif #21

Pattern  G G G T A A
p-value  0.000574
Alpha (α)  0.00359

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.186 0.175 0.211 0.189 0.455 0.422
C 0.17 0.204 0.193 0.184 0.182 0.21
G 0.448 0.44 0.426 0.179 0.161 0.164
T 0.196 0.181 0.169 0.449 0.202 0.204

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT00.00723[239..244]  AGTCGCTC   G G G T A A   TAATCCAA 
randSeqT0 (R)0.00723[40..35]  TTCCTTCA   G G G T A A   AGATCCGC 
randSeqT10.00359[169..174]  AGGTCCGG   G G G T A C   GCGGTTTA 
randSeqT20.00723[401..406]  CAGTTTTA   G G G T A A   GTATAATT 
randSeqT40.00359[487..492]  CCCAATCC   G G G T A C   ATTCTCA 
randSeqT8 (R)0.00723[42..37]  TCGGCCCA   G G G T A A   GACATCGA 
randSeqT90.00723[417..422]  CCGGTTTG   G G G T A A   CGTCTAAA 
randSeqT9 (R)0.00723[375..370]  CTGCCTAA   G G G T A A   GATCGAGC 
randSeqT10 (R)0.00723[40..35]  TGGTTCTC   G G G T A A   AAACATAG 
randSeqT12 (R)0.00359[352..347]  TTACTGAC   G G G T A C   CACGGGCC 
randSeqT13 (R)0.00723[462..457]  GAGTTAGC   G G G T A A   GAATCTAA 
randSeqT130.00359[255..260]  GACTACAT   G G G T A C   CAGACTAC 
randSeqT160.00723[494..499]  ATGCTTCA   G G G T A A    
randSeqT16 (R)0.00723[393..388]  GTTAGCCT   G G G T A A   ACAGTTAG 
randSeqT180.00723[391..396]  GAGTTCTG   G G G T A A   CCTAGAGA 
randSeqT18 (R)0.00359[266..261]  ACTAATCG   G G G T A C   GATAATCC 
randSeqT19 (R)0.00359[368..363]  TATCGTGT   G G G T A C   GTTTCGGA 
randSeqT19 (R)0.00359[32..27]  TACTGTGG   G G G T A C   GTCTTGGA 

[back]

Motif #22

Pattern  T T A C C C
p-value  0.000574
Alpha (α)  0.00359

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.204 0.202 0.449 0.169 0.181 0.196
C 0.164 0.161 0.179 0.426 0.44 0.448
G 0.21 0.182 0.184 0.193 0.204 0.17
T 0.422 0.455 0.189 0.211 0.175 0.186

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT00.00723[35..40]  ATACCGCC   T T A C C C   TGAAGGAA 
randSeqT0 (R)0.00723[244..239]  TTGGATTA   T T A C C C   ACCGATAG 
randSeqT1 (R)0.00359[174..169]  TAAACCGC   G T A C C C   TACACGGG 
randSeqT2 (R)0.00723[406..401]  AATTATAC   T T A C C C   CCCTTGTG 
randSeqT4 (R)0.00359[492..487]  TGAGAAT   G T A C C C   AATGTAAC 
randSeqT80.00723[37..42]  GTCGTATA   T T A C C C   TGGGCCGA 
randSeqT90.00723[370..375]  CCGAAGAA   T T A C C C   TTAGGCAG 
randSeqT9 (R)0.00723[422..417]  TTTAGACG   T T A C C C   TTTATTCT 
randSeqT100.00723[35..40]  TTTTGGCG   T T A C C C   GAGAACCA 
randSeqT120.00359[347..352]  CTGTCCTC   G T A C C C   GTCAGTAA 
randSeqT130.00723[457..462]  ACATGGCC   T T A C C C   GCTAACTC 
randSeqT13 (R)0.00359[260..255]  GTAGTCTG   G T A C C C   TGACTACA 
randSeqT160.00723[388..393]  AACCAGAT   T T A C C C   AGGCTAAC 
randSeqT16 (R)0.00723[499..494]     T T A C C C   TGCGAGAA 
randSeqT18 (R)0.00723[396..391]  TCTCTAGG   T T A C C C   GGCACTAA 
randSeqT180.00359[261..266]  CCCAGGTT   G T A C C C   CGATTAGT 
randSeqT190.00359[27..32]  AATGCAAC   G T A C C C   CCACAGTA 
randSeqT190.00359[363..368]  ATATGGCT   G T A C C C   ACACGATA 

[back]

Motif #23

Pattern  G T G A T A
p-value  0.000597
Alpha (α)  0.0156

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.167 0.167 0.167 0.5 0.167 0.5
C 0.167 0.167 0.167 0.167 0.167 0.167
G 0.5 0.167 0.5 0.167 0.167 0.167
T 0.167 0.5 0.167 0.167 0.5 0.167

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT00.0156[24..29]  CCCTGGAG   G T G A T A   CCGCCTTA 
randSeqT50.0156[339..344]  GAAGGAGG   G T G A T A   CCCGTCGA 
randSeqT50.0156[476..481]  GAAGTGCA   G T G A T A   GCCTGTTG 
randSeqT80.0156[480..485]  GGCCGGCG   G T G A T A   AGCGTGAT 
randSeqT80.0156[489..494]  TGATAAGC   G T G A T A   CCATA 
randSeqT100.0156[237..242]  AGACTAAG   G T G A T A   GGTAGGCG 
randSeqT12 (R)0.0156[196..191]  CAGGTCAG   G T G A T A   GTCCCCAT 
randSeqT17 (R)0.0156[397..392]  ACCCTACC   G T G A T A   TGCTAACA 
randSeqT17 (R)0.0156[334..329]  ACTGTATG   G T G A T A   TACCATTA 
randSeqT180.0156[127..132]  ACGGTGGT   G T G A T A   CAGTTGGG 
randSeqT180.0156[238..243]  CGGATGGC   G T G A T A   ATCCTAGT 

[back]

Motif #24

Pattern  T A T C A C
p-value  0.000597
Alpha (α)  0.0156

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.167 0.5 0.167 0.167 0.5 0.167
C 0.167 0.167 0.167 0.5 0.167 0.5
G 0.167 0.167 0.167 0.167 0.167 0.167
T 0.5 0.167 0.5 0.167 0.167 0.167

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT0 (R)0.0156[29..24]  TAAGGCGG   T A T C A C   GCAACGGA 
randSeqT5 (R)0.0156[481..476]  CAACAGGC   T A T C A C   ACGTAATA 
randSeqT5 (R)0.0156[344..339]  TCGACGGG   T A T C A C   CTTCCCAG 
randSeqT8 (R)0.0156[494..489]  TATGG   T A T C A C   CCAATGAT 
randSeqT8 (R)0.0156[485..480]  ATCACGCT   T A T C A C   GCACTGAA 
randSeqT10 (R)0.0156[242..237]  CGCCTACC   T A T C A C   GTGATCGT 
randSeqT120.0156[191..196]  GGCGCTAG   T A T C A C   CTGACCTG 
randSeqT170.0156[329..334]  GTGACTCA   T A T C A C   CATACAGT 
randSeqT170.0156[392..397]  ACGTACTG   T A T C A C   GGTAGGGT 
randSeqT18 (R)0.0156[243..238]  ACTAGGAT   T A T C A C   ACCCCGAT 
randSeqT18 (R)0.0156[132..127]  CCCAACTG   T A T C A C   GCCAAGTT 

[back]

Motif #25

Pattern  G T A T A C
p-value  0.000607
Alpha (α)  0.00491

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.173 0.174 0.348 0.181 0.458 0.14
C 0.159 0.247 0.136 0.149 0.174 0.473
G 0.487 0.176 0.19 0.127 0.212 0.156
T 0.182 0.403 0.326 0.543 0.155 0.232

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT00.00801[493..498]  ACGCGGGC   G T A T A C   G 
randSeqT0 (R)0.00801[498..493]  C   G T A T A C   CTCATTTG 
randSeqT1 (R)0.00752[101..96]  GACACGCG   G T T T A C   CGTAATGT 
randSeqT10.00491[139..144]  AATAGTTT   G C A T A C   GCCTCAAT 
randSeqT2 (R)0.00491[165..160]  TGTGCTCC   G C A T A C   CAGCTATT 
randSeqT3 (R)0.00752[355..350]  TTATCTAG   G T T T A C   GTTATATC 
randSeqT40.00801[215..220]  CTATGTCA   G T A T A C   AGTTAGTA 
randSeqT4 (R)0.00801[220..215]  TACTAACT   G T A T A C   AAGACCAT 
randSeqT5 (R)0.00752[304..299]  GTCTCGTT   G T T T A C   ACTATTGG 
randSeqT6 (R)0.00752[293..288]  AGTGGCAT   G T T T A C   CGGTACCT 
randSeqT60.00491[145..150]  CTTCGATT   G C A T A C   GCAGAAGT 
randSeqT7 (R)0.00752[178..173]  CCTGTCTT   G T T T A C   TAGCAACC 
randSeqT70.00491[71..76]  TTCAGACG   G C A T A C   ATAAACGA 
randSeqT9 (R)0.00752[462..457]  AGGACCAG   G T T T A C   ATGAACCT 
randSeqT100.00801[218..223]  GGTCCCGT   G T A T A C   TAGGGAGA 
randSeqT10 (R)0.00801[223..218]  TCTCCCTA   G T A T A C   CATAACGG 
randSeqT11 (R)0.00752[287..282]  TCATCGGT   G T T T A C   TAACCAAA 
randSeqT11 (R)0.00491[359..354]  AAGCACGG   G C A T A C   AAAAGCAG 
randSeqT12 (R)0.00491[456..451]  TGCGCGTC   G C A T A C   CATAGCGT 
randSeqT12 (R)0.00491[295..290]  TCACGTAA   G C A T A C   CTTCCCCA 
randSeqT13 (R)0.00491[426..421]  CAGCTTAC   G C A T A C   TGCTATGT 
randSeqT14 (R)0.00491[27..22]  TACGACAT   G C A T A C   CAGAACCG 
randSeqT16 (R)0.00752[320..315]  CCATTCGT   G T T T A C   CTTCTACG 
randSeqT170.00752[235..240]  ACATTTGG   G T T T A C   AACGCGCT 
randSeqT170.00752[404..409]  ACGGTAGG   G T T T A C   CAATTACA 

[back]

Motif #26

Pattern  G T A T A C
p-value  0.000607
Alpha (α)  0.00491

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.232 0.155 0.543 0.326 0.403 0.182
C 0.156 0.212 0.127 0.19 0.176 0.487
G 0.473 0.174 0.149 0.136 0.247 0.159
T 0.14 0.458 0.181 0.348 0.174 0.173

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT00.00801[493..498]  ACGCGGGC   G T A T A C   G 
randSeqT0 (R)0.00801[498..493]  C   G T A T A C   CTCATTTG 
randSeqT10.00752[96..101]  TCGAGTCA   G T A A A C   CGCGTGTC 
randSeqT1 (R)0.00491[144..139]  ATTGAGGC   G T A T G C   AGCCTAGA 
randSeqT20.00491[160..165]  CTTGAGGT   G T A T G C   GGAGCACA 
randSeqT30.00752[350..355]  CAAAAAAC   G T A A A C   CTAGATAA 
randSeqT40.00801[215..220]  CTATGTCA   G T A T A C   AGTTAGTA 
randSeqT4 (R)0.00801[220..215]  TACTAACT   G T A T A C   AAGACCAT 
randSeqT50.00752[299..304]  GGGACATG   G T A A A C   AACGAGAC 
randSeqT60.00752[288..293]  GGTGGATT   G T A A A C   ATGCCACT 
randSeqT6 (R)0.00491[150..145]  ACTTCTGC   G T A T G C   CACGACGA 
randSeqT70.00752[173..178]  CCAGAGTC   G T A A A C   AAGACAGG 
randSeqT7 (R)0.00491[76..71]  TCGTTTAT   G T A T G C   GAAAATGG 
randSeqT90.00752[457..462]  TTCCAATA   G T A A A C   CTGGTCCT 
randSeqT100.00801[218..223]  GGTCCCGT   G T A T A C   TAGGGAGA 
randSeqT10 (R)0.00801[223..218]  TCTCCCTA   G T A T A C   CATAACGG 
randSeqT110.00752[282..287]  AAAAGGAA   G T A A A C   ACCGATGA 
randSeqT110.00491[52..57]  AATCACGG   G T A T G C   GTCCTTTA 
randSeqT120.00491[290..295]  CAATGGTA   G T A T G C   TTACGTGA 
randSeqT120.00491[451..456]  ATCACCTA   G T A T G C   GACGCGCA 
randSeqT130.00491[421..426]  GACAGTTT   G T A T G C   GTAAGCTG 
randSeqT140.00491[22..27]  GACATCAT   G T A T G C   ATGTCGTA 
randSeqT160.00752[315..320]  AGGGTTCA   G T A A A C   ACGAATGG 
randSeqT17 (R)0.00752[409..404]  TGTAATTG   G T A A A C   GGACTAAG 
randSeqT17 (R)0.00752[240..235]  AGCGCGTT   G T A A A C   GCGATAGT 

[back]

Motif #27

Pattern  C A C A T G
p-value  0.000621
Alpha (α)  0.00581

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.17 0.494 0.166 0.511 0.162 0.188
C 0.495 0.167 0.489 0.165 0.168 0.163
G 0.16 0.175 0.161 0.169 0.163 0.486
T 0.174 0.164 0.184 0.156 0.507 0.163

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT1 (R)0.00581[219..214]  TCCGCGTA   C A C A T A   TTCGCATG 
randSeqT1 (R)0.00581[36..31]  AGCTCGAA   C A C A T A   TTAACTAC 
randSeqT20.0151[170..175]  ATGCGGAG   C A C A T G   CCTCATGT 
randSeqT2 (R)0.0151[184..179]  GGAACCCG   C A C A T G   ACAGGGTG 
randSeqT3 (R)0.0151[330..325]  ATACGTTC   C A C A T G   ACCAACAT 
randSeqT4 (R)0.00581[269..264]  TCAGGAGG   C A C A T A   CCGTAAAC 
randSeqT6 (R)0.0151[384..379]  AGGCTGGT   C A C A T G   TCGGTTCG 
randSeqT70.0151[119..124]  CAGGCAGC   C A C A T G   TGAGGAGG 
randSeqT7 (R)0.0151[126..121]  ACCCTCCT   C A C A T G   TTCATAGG 
randSeqT8 (R)0.00581[346..341]  GATTGCCA   C A C A T A   AGGAACTC 
randSeqT10 (R)0.00581[304..299]  AAGCCTGC   C A C A T A   AAGAACAT 
randSeqT11 (R)0.00581[372..367]  CAACCCAG   C A C A T A   GTCTGGCA 
randSeqT120.0151[328..333]  TTTGCTGG   C A C A T G   ATTTCCTG 
randSeqT12 (R)0.00581[6..1]  TAACCAGC   C A C A T A    
randSeqT130.0151[448..453]  GCGGGAGA   C A C A T G   GCCTTACC 
randSeqT13 (R)0.00581[88..83]  TACCGACA   C A C A T A   TTTGTATG 
randSeqT14 (R)0.0151[330..325]  CCGTCCAC   C A C A T G   TACTGGTT 
randSeqT14 (R)0.0151[312..307]  GTTATTTA   C A C A T G   TCCACTTT 
randSeqT15 (R)0.00581[255..250]  CGCCCTTC   C A C A T A   ATGTGGAA 
randSeqT16 (R)0.0151[464..459]  ATCTGGGT   C A C A T G   ACATCTCC 
randSeqT19 (R)0.00581[272..267]  CGGGTGCA   C A C A T A   CTTTCGCC 
randSeqT19 (R)0.00581[173..168]  GGGGCCAC   C A C A T A   CTAGGGTT 

[back]

Motif #28

Pattern  C A T G T G
p-value  0.000621
Alpha (α)  0.00581

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.163 0.507 0.156 0.184 0.164 0.174
C 0.486 0.163 0.169 0.161 0.175 0.16
G 0.163 0.168 0.165 0.489 0.167 0.495
T 0.188 0.162 0.511 0.166 0.494 0.17

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT10.00581[31..36]  CATCCCAA   T A T G T G   TTCGAGCT 
randSeqT10.00581[214..219]  AAACATGC   T A T G T G   TACGCGGA 
randSeqT20.0151[179..184]  ACATGCCT   C A T G T G   CGGGTTCC 
randSeqT2 (R)0.0151[175..170]  ACATGAGG   C A T G T G   CTGCGATT 
randSeqT30.0151[325..330]  ACTATTTG   C A T G T G   GAACGTAT 
randSeqT40.00581[264..269]  CTGTCTTT   T A T G T G   CCTCCTGA 
randSeqT60.0151[379..384]  TGGTCTCC   C A T G T G   ACCAGCCT 
randSeqT70.0151[121..126]  GGCAGCCA   C A T G T G   AGGAGGGT 
randSeqT7 (R)0.0151[124..119]  CCTCCTCA   C A T G T G   CATAGGGC 
randSeqT80.00581[341..346]  CCTTTCTT   T A T G T G   TGGCAATC 
randSeqT100.00581[299..304]  TACGGGCC   T A T G T G   GCAGGCTT 
randSeqT110.00581[367..372]  CCCGTGCT   T A T G T G   CTGGGTTG 
randSeqT12 (R)0.0151[333..328]  CAGGAAAT   C A T G T G   CGCATGCT 
randSeqT120.00581[1..6]     T A T G T G   GCTGGTTA 
randSeqT13 (R)0.0151[453..448]  GGTAAGGC   C A T G T G   TCTAGTCT 
randSeqT130.00581[83..88]  GCTCATGC   T A T G T G   TGTCGGTA 
randSeqT140.0151[307..312]  CACGTCTA   C A T G T G   TAAATAAC 
randSeqT140.0151[325..330]  TAACGTCC   C A T G T G   GTGGACGG 
randSeqT150.00581[250..255]  CCTGACTA   T A T G T G   GAAGGGCG 
randSeqT160.0151[459..464]  AATAACTA   C A T G T G   ACCCAGAT 
randSeqT190.00581[168..173]  TATTGTTT   T A T G T G   GTGGCCCC 
randSeqT190.00581[267..272]  GTTTAGCA   T A T G T G   TGCACCCG 

[back]

Motif #29

Pattern  C G T A T A
p-value  0.000977
Alpha (α)  0.00122

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.238 0.247 0.205 0.297 0.194 0.363
C 0.346 0.189 0.252 0.294 0.233 0.203
G 0.202 0.35 0.211 0.225 0.203 0.221
T 0.214 0.214 0.332 0.184 0.369 0.212

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT00.0016[492..497]  AACGCGGG   C G T A T A   CG 
randSeqT0 (R)0.0016[499..494]     C G T A T A   ACTCATTT 
randSeqT2 (R)0.00122[166..161]  ATGTGCTC   C G C A T A   GCAGCTAT 
randSeqT30.00159[279..284]  TAATTCTC   C G T C T A   TTCGAACC 
randSeqT4 (R)0.0016[447..442]  AGTTCAAA   C G T A T A   TATGCCAG 
randSeqT60.00159[105..110]  CCATAGTA   C G T C T A   GCATGTAC 
randSeqT6 (R)0.00159[401..396]  CATTGTTG   C G T C T A   CGTCTAGC 
randSeqT7 (R)0.0016[377..372]  TATGAAAA   C G T A T A   GAGGGTTC 
randSeqT80.0016[31..36]  ACTGAAGT   C G T A T A   TTACCCTG 
randSeqT8 (R)0.0016[279..274]  GTCGGGAT   C G T A T A   GTATTAGC 
randSeqT9 (R)0.0016[250..245]  CATATGGA   C G T A T A   ATGCGTTG 
randSeqT90.00159[423..428]  TGGGGTAA   C G T C T A   AACGCACG 
randSeqT10 (R)0.00159[319..314]  AAGTGCCC   C G T C T A   ACTAATCC 
randSeqT11 (R)0.00122[256..251]  AGCCCCGC   C G C A T A   TTATGCGG 
randSeqT11 (R)0.00122[58..53]  CTAAAGGA   C G C A T A   AAAGGGGC 
randSeqT12 (R)0.00122[457..452]  GTGCGCGT   C G C A T A   ACATAGCG 
randSeqT12 (R)0.00122[310..305]  CATGGGGA   C G C A T A   CCTGACCT 
randSeqT13 (R)0.00122[427..422]  GCAGCTTA   C G C A T A   ATGCTATG 
randSeqT140.00159[301..306]  CAAACGCA   C G T C T A   CATGTGTA 
randSeqT14 (R)0.00122[449..444]  CTCCGATA   C G C A T A   TCTTTTCT 
randSeqT150.0016[410..415]  CCCGATCC   C G T A T A   GTCTAGGT 
randSeqT15 (R)0.00159[480..475]  GCGTGCAA   C G T C T A   CTTACTTC 
randSeqT16 (R)0.00159[123..118]  TGCGGCCG   C G T C T A   CAGATTTA 
randSeqT17 (R)0.00122[464..459]  ACAATAAA   C G C A T A   GGGTGGAG 
randSeqT17 (R)0.00122[291..286]  TTTTCATA   C G C A T A   TGTTCTGC 
randSeqT18 (R)0.00159[281..276]  GTGTTTAG   C G T C T A   GAGCTCGG 
randSeqT190.0016[123..128]  AAACAGTT   C G T A T A   AAAATCAG 
randSeqT190.00159[108..113]  TCTTCGGG   C G T C T A   AAAACAGT 

[back]

Motif #30

Pattern  T A T A C G
p-value  0.000977
Alpha (α)  0.00122

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.212 0.369 0.184 0.332 0.214 0.214
C 0.221 0.203 0.225 0.211 0.35 0.202
G 0.203 0.233 0.294 0.252 0.189 0.346
T 0.363 0.194 0.297 0.205 0.247 0.238

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT00.0016[494..499]  CGCGGGCG   T A T A C G    
randSeqT0 (R)0.0016[497..492]  CG   T A T A C G   TCATTTGC 
randSeqT20.00122[161..166]  TTGAGGTG   T A T G C G   GAGCACAT 
randSeqT3 (R)0.00159[284..279]  GGTTCGAA   T A G A C G   TTCCGCCC 
randSeqT40.0016[442..447]  ATCACACC   T A T A C G   TTTGAACT 
randSeqT60.00159[396..401]  AGCCTCCT   T A G A C G   CAACAATG 
randSeqT6 (R)0.00159[110..105]  GTACATGC   T A G A C G   TAGACGCA 
randSeqT70.0016[372..377]  TACGCGCC   T A T A C G   TTTTCATA 
randSeqT80.0016[274..279]  ATCATACC   T A T A C G   ATCCCGAC 
randSeqT8 (R)0.0016[36..31]  CAGGGTAA   T A T A C G   GAGGCCGG 
randSeqT90.0016[245..250]  ATGGTACT   T A T A C G   TCCATATG 
randSeqT9 (R)0.00159[428..423]  CGTGCGTT   T A G A C G   TCTCGGTT 
randSeqT100.00159[314..319]  CAGGCTTA   T A G A C G   GGGCACTT 
randSeqT110.00122[53..58]  ATCACGGG   T A T G C G   TCCTTTAG 
randSeqT110.00122[251..256]  ATAATGCT   T A T G C G   GCGGGGCT 
randSeqT120.00122[305..310]  TACGTGAC   T A T G C G   TCCCCATG 
randSeqT120.00122[452..457]  TCACCTAG   T A T G C G   ACGCGCAC 
randSeqT130.00122[422..427]  ACAGTTTG   T A T G C G   TAAGCTGC 
randSeqT14 (R)0.00159[306..301]  TACACATG   T A G A C G   TTATTTGC 
randSeqT140.00122[444..449]  GGCTCTAC   T A T G C G   TATCGGAG 
randSeqT15 (R)0.0016[415..410]  ACCTAGAC   T A T A C G   GTTCGGGG 
randSeqT150.00159[475..480]  TAACGCCG   T A G A C G   TTGCACGC 
randSeqT160.00159[118..123]  TACACAGT   T A G A C G   CGGCCGCA 
randSeqT170.00122[286..291]  CTTACCAT   T A T G C G   TATGAAAA 
randSeqT170.00122[459..464]  ACGCGGGG   T A T G C G   TTTATTGT 
randSeqT180.00159[276..281]  GATTAGTG   T A G A C G   CTAAACAC 
randSeqT19 (R)0.0016[128..123]  CTGATTTT   T A T A C G   TCCTATTG 
randSeqT19 (R)0.00159[113..108]  ACTGTTTT   T A G A C G   ACGTCAGC 

[back]

Motif #31

Pattern  A T G T G G
p-value  0.00106
Alpha (α)  0.0156

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.5 0.167 0.167 0.167 0.167 0.167
C 0.167 0.167 0.167 0.167 0.167 0.167
G 0.167 0.167 0.5 0.167 0.5 0.5
T 0.167 0.5 0.167 0.5 0.167 0.167

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT20.0156[118..123]  TGCCAAAT   A T G T G G   GCTGCTTG 
randSeqT30.0156[326..331]  CTATTTGC   A T G T G G   AACGTATC 
randSeqT70.0156[56..61]  CCCGAAGT   A T G T G G   TTTCAGAC 
randSeqT70.0156[198..203]  TACAGGCT   A T G T G G   CTGCAGAT 
randSeqT100.0156[300..305]  ACGGGCCT   A T G T G G   CAGGCTTA 
randSeqT120.0156[2..7]  T   A T G T G G   CTGGTTAA 
randSeqT140.0156[277..282]  CTCCTCTT   A T G T G G   TAAGTGTA 
randSeqT140.0156[326..331]  AACGTCCC   A T G T G G   TGGACGGA 
randSeqT150.0156[251..256]  CTGACTAT   A T G T G G   AAGGGCGG 
randSeqT160.0156[410..415]  CTTCACGG   A T G T G G   CTAGCTCA 
randSeqT190.0156[169..174]  ATTGTTTT   A T G T G G   TGGCCCCG 
randSeqT19 (R)0.0156[153..148]  TAACGAGG   A T G T G G   ATATATGG 

[back]

Motif #32

Pattern  C C A C A T
p-value  0.00106
Alpha (α)  0.0156

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.167 0.167 0.5 0.167 0.5 0.167
C 0.5 0.5 0.167 0.5 0.167 0.167
G 0.167 0.167 0.167 0.167 0.167 0.167
T 0.167 0.167 0.167 0.167 0.167 0.5

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT2 (R)0.0156[123..118]  CAAGCAGC   C C A C A T   GTTAGGGA 
randSeqT3 (R)0.0156[331..326]  GATACGTT   C C A C A T   GACCAACA 
randSeqT70.0156[118..123]  CCAGGCAG   C C A C A T   GTGAGGAG 
randSeqT7 (R)0.0156[203..198]  ATCTGCAG   C C A C A T   AGTCAAGA 
randSeqT10 (R)0.0156[305..300]  TAAGCCTG   C C A C A T   CAAGAACA 
randSeqT12 (R)0.0156[7..2]  TTAACCAG   C C A C A T   C 
randSeqT14 (R)0.0156[331..326]  TCCGTCCA   C C A C A T   ATACTGGT 
randSeqT14 (R)0.0156[282..277]  TACACTTA   C C A C A T   GAGCGAAG 
randSeqT15 (R)0.0156[256..251]  CCGCCCTT   C C A C A T   TATGTGGA 
randSeqT16 (R)0.0156[415..410]  TGAGCTAG   C C A C A T   GGAAAGGT 
randSeqT190.0156[148..153]  TTCGGATC   C C A C A T   CCTCGTTA 
randSeqT19 (R)0.0156[174..169]  CGGGGCCA   C C A C A T   GCTAGGGT 

[back]

Motif #33

Pattern  A C G C A T
p-value  0.00106
Alpha (α)  0.0156

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.5 0.167 0.167 0.167 0.5 0.167
C 0.167 0.5 0.167 0.5 0.167 0.167
G 0.167 0.167 0.5 0.167 0.167 0.167
T 0.167 0.167 0.167 0.167 0.167 0.5

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT0 (R)0.0156[176..171]  GGAATCGT   A C G C A T   ACCGGAGA 
randSeqT4 (R)0.0156[120..115]  GTGTCCTG   A C G C A T   GCAGAGCT 
randSeqT6 (R)0.0156[277..272]  TCCACCGA   A C G C A T   AGTGGTAG 
randSeqT9 (R)0.0156[261..256]  GGCCACCA   A C G C A T   TATACGTC 
randSeqT11 (R)0.0156[59..54]  GCTAAAGG   A C G C A T   GAAAGGGG 
randSeqT12 (R)0.0156[311..306]  CCATGGGG   A C G C A T   ACCTGACC 
randSeqT130.0156[267..272]  ACCAGACT   A C G C A T   CATTCAGA 
randSeqT13 (R)0.0156[428..423]  GGCAGCTT   A C G C A T   CATGCTAT 
randSeqT14 (R)0.0156[450..445]  ACTCCGAT   A C G C A T   ATCTTTTC 
randSeqT17 (R)0.0156[465..460]  TACAATAA   A C G C A T   GGGGTGGA 
randSeqT17 (R)0.0156[322..317]  TATGAGTC   A C G C A T   GAAAAGTA 
randSeqT190.0156[84..89]  CGTAGGTT   A C G C A T   AGAAAGTG 

[back]

Motif #34

Pattern  A T G C G T
p-value  0.00106
Alpha (α)  0.0156

Probility Matrix:

  #1 #2 #3 #4 #5 #6
A 0.5 0.167 0.167 0.167 0.167 0.167
C 0.167 0.167 0.167 0.5 0.167 0.167
G 0.167 0.167 0.5 0.167 0.5 0.167
T 0.167 0.5 0.167 0.167 0.167 0.5

Pattern appearing in the sequences:

Sequence Name  Score  Pattern rangePattern
randSeqT00.0156[171..176]  TGTTGTGC   A T G C G T   ACGATTCC 
randSeqT40.0156[115..120]  CACACACG   A T G C G T   CAGGACAC 
randSeqT60.0156[272..277]  CTGTTACA   A T G C G T   TCGGTGGA 
randSeqT90.0156[256..261]  ACGTCCAT   A T G C G T   TGGTGGCC 
randSeqT110.0156[54..59]  TCACGGGT   A T G C G T   CCTTTAGC 
randSeqT120.0156[306..311]  ACGTGACT   A T G C G T   CCCCATGG 
randSeqT130.0156[423..428]  CAGTTTGT